SARS-CoV-2_Iota_variant

SARS-CoV-2 Iota variant

SARS-CoV-2 Iota variant

Variant of the SARS-Cov-2 virus first identified in New York City


Iota variant,[1] also known as lineage B.1.526, is one of the variants of SARS-CoV-2, the virus that causes COVID-19. It was first detected in New York City in November 2020. The variant has appeared with two notable mutations: the E484K spike mutation, which may help the virus evade antibodies, and the S477N mutation, which helps the virus bind more tightly to human cells.[2]

By February 2021, it had spread rapidly in the New York region and accounted for about one in four viral sequences.[3][4] By 11 April 2021, the variant had been detected in at least 48 U.S. states and 18 countries.[5][6]

Under the simplified naming scheme proposed by the World Health Organization, B.1.526 has been labeled Iota variant, and is considered a variant of interest (VOI), but not yet a variant of concern.[7]

Mutations

The Iota (B.1.526) genome contains the following amino-acid mutations, all of which are in the virus's spike protein code: L5F, T95I, D253G, E484K, D614G and A701V.[8]

History

The increase of the Iota variant was captured by researchers at Caltech by scanning for mutations in a database known as GISAID, a global science initiative that has documented over 700,000 genomic sequences of SARS-CoV-2.[10][11]

The proportion of USA cases represented by the Iota variant had declined sharply by the end of July 2021 as the Delta variant became dominant.[12]

Statistics

More information Country, Confirmed cases ...

See also


References

  1. "Tracking SARS-CoV-2 variants". www.who.int. Retrieved June 1, 2021.
  2. Barton, Michael I; MacGowan, Stuart A; Kutuzov, Mikhail A; Dushek, Omer; Barton, Geoffrey John; van der Merwe, P Anton (August 26, 2021). Fouchier, Ron AM; Van der Meer, Jos W; Fouchier, Ron AM (eds.). "Effects of common mutations in the SARS-CoV-2 Spike RBD and its ligand, the human ACE2 receptor on binding affinity and kinetics". eLife. 10: e70658. doi:10.7554/eLife.70658. ISSN 2050-084X. PMC 8480977. PMID 34435953.
  3. Rosa-Aquino, Matt Stieb, Paola (March 21, 2021). "Everything We Know About the Coronavirus Variant Spreading in New York City". Intelligencer. Retrieved April 10, 2021.{{cite web}}: CS1 maint: multiple names: authors list (link)
  4. Mandavilli, Apoorva (February 24, 2021). "A New Coronavirus Variant Is Spreading in New York, Researchers Report". The New York Times. ISSN 0362-4331. Retrieved April 10, 2021.
  5. "outbreak.info". outbreak.info. Retrieved April 10, 2021.
  6. "PANGO lineages Lineage B.1.526". cov-lineages.org. April 22, 2021. Archived from the original on April 22, 2021. Retrieved April 22, 2021.
  7. "Tracking SARS-CoV-2 variants". www.who.int. Retrieved June 1, 2021.
  8. "SARS-CoV-2 Variant Classifications and Definitions". CDC.gov. Centers for Disease Control and Prevention. February 11, 2020. Retrieved July 5, 2021.
  9. "Spike Variants: Iota variant, aka B.1.526". covdb.stanford.edu. Stanford University Coronavirus Antiviral & Resistance Database. July 1, 2021. Retrieved July 5, 2021.
  10. Corum, Jonathan; Zimmer, Carl (February 9, 2021). "Coronavirus Variants and Mutations". The New York Times. ISSN 0362-4331. Retrieved April 10, 2021.
  11. West, Anthony P.; Barnes, Christopher O.; Yang, Zhi; Bjorkman, Pamela J. (February 23, 2021). "SARS-CoV-2 lineage B.1.526 emerging in the New York region detected by software utility created to query the spike mutational landscape". bioRxiv: 2021.02.14.431043. doi:10.1101/2021.02.14.431043. PMC 8077570. PMID 33907745. S2CID 231981267.
  12. "GISAID - hCov19 Variants". www.gisaid.org. Retrieved July 2, 2021.

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