This is a list of the discography of Daniel Johnston, who lived in Austin, Texas.

Before the production of 'Yip/Jump Music' in 1983, Johnston had no way to copy his albums, and so each copy would be an entirely unique recording. The standardised copies of these albums were released when Stress Records purchased Johnston's back catalog in 1986.

• The Lost Recordings (Stress Records, recorded 1983, released 1992) cassette
• The Lost Recordings II (Stress Records, recorded 1983, released 1992) cassette
• A Texas Trip - contributed two songs (Caroline Records, 1987)
• Please Don't Feed The Ego (Eternal Yip Eye Music, 1994)
• Dead Dog's Eyeball: Songs of Daniel Johnston, by Kathy McCarty (1994)
• My So-Called Life - contributed "Come See Me Tonight" (1995)
• Schoolhouse Rock! Rocks - contributed "Unpack Your Adjectives" (1996)
• The Early Recordings of Daniel Johnston Volume 1 (Dualtone, 2003) - Reissue of Songs of Pain and More Songs of Pain
• The Sun Shines Down On Me by Gerry Nobody (2003)
• The Late Great Daniel Johnston: Discovered Covered (Gammon Records, 2004) - Tribute album along with disc of original versions plus one new song
• White Magic: From The Cassette Archives 1979–1989 (Eternal Yip Eye Music, 2004)
• I Killed the Monster: 21 Artists Performing the Songs of Daniel Johnston (2006) - Tribute album featuring contributions from Sufjan Stevens, Mike Watt, Jad Fair and Kimya Dawson
• Apskaft Tribute To Daniel Johnston (The Sound Of Apskaft, 2011)
• 50minutes (EXERCISE1 Recordings, 2006)
• Welcome To My World (Eternal Yip Eye Music, 2006)
• My Yoke Is Heavy: The Songs of Daniel Johnston by Adrian Crowley and James Yorkston (Chemikal Underground, 2013)

• The Devil and Daniel Johnston
• The Angel and Daniel Johnston - Live at the Union Chapel
• Daniel Johnston at Home LIVE recorded live in Waller Texas 1999 (Stephen Tompkins, Digital Download video/mp3 release 2009)